MICROBIAL GENOMICS FOR RISK ANALYSIS IN THE FOOD CHAIN
cod. 1009238

Academic year 2022/23
2° year of course -
Professor
Frederique PASQUALI
Academic discipline
Ispezione degli alimenti di origine animale (VET/04)
Field
A scelta dello studente
Type of training activity
Student's choice
24 hours
of face-to-face activities
3 credits
hub: -
course unit
in ENGLISH

Learning objectives

Students will acquire knowledges on microbial genomics applied to outbreak investigation, source attribution and risk assessment. Whole genome sequencing platforms and technologies will be described. Benefits of a real-time outbreak investigation and a more targeted source attribution and hazard identification/characterisation will be discussed along with major challenges and opportunities.

Prerequisites

none

Course unit content

Whole genome sequencing platforms and technologies
Introduction to microbial risk analysis
WGS and outbreak investigation (definition of outbreak, subtyping approaches, platforms for real-time outbreak investigation)
WGS and source attribution (frequency-matching, machine learning, network models)
Genome Wide Association Studies and prediction of phenotypic traits
WGS and risk assessment (pathogen typing and characterisation for hazard identification, prediction of virulence potential for dose-response relationships in hazard characterisation, prediction of phenotypic traits associated to growth/survival for exposure assessment)

Full programme

- - -

Bibliography

ppt presentations, published scientific papers

Teaching methods

Oral lectures, scientific seminaries

Assessment methods and criteria

Oral examination. Final grading of the integrated course will be an average of the scores obtained in the two course units

Other information

Participation is not mandatory but highly recommended

The professor is available to meet the students upon fixing a date by email to frederique.pasquali@unibo.it

2030 agenda goals for sustainable development

- - -

Contacts

Toll-free number

800 904 084

Student's office

E. segreteria.scienzealimenti@unipr.it 
 

Quality assurance service 

Course quality assurance manager:
Dott.ssa Caterina Scopelliti
T. +39 0521 905969
E. service didattica.scienzealimenti@unipr.it
E. manager caterina.scopelliti@unipr.it

Course President

Prof.ssa Tullia Tedeschi
E. tullia.tedeschi@unipr.it 

Deputy Course President

Prof.ssa Valentina Bernini
E. valentina.bernini@unipr.it 

 

Delegate for guidance

Prof.ssa Emanuela Zanardi
E. emanula.zanardi@unipr.it 

Delegate for career guidance

Prof.ssa Francesca Bot
E. francesca.bot@unipr.it  

Delegate for tutoring

Prof.ssa Emanuela Zanardi
E. emanuela.zanardi@unipr.it 

Member of the International student mobility commission

Prof. Francesco Martelli
E. francesco.martelli@unipr.it  
 

Responsible for Course Quality Assurance (RAQ)

Prof.ssa Chiara Dall'Asta
E. chiara.dallasta@unipr.it

 

Contact person for students with disabilities, specific learning difficulties,(SpLD) or vulnerable groups

Prof.ssa Marilena Musci
E. marilena.musci@unipr.it 

 

Delegates for internships

Prof.ssa Tullia Tedeschi - Unipr
E. tullia.tedeschi@unipr.it 

Prof.ssa Paola Battilani - Università Sacro Cuore PC
E. paola.battilani@unipr.it

Prof. Pietro Rocculi - Unibo
E. pietro.rocculi3@unibo.it  

Prof. Emilio Stefani - Unimore
E. emilio.stefani@unipr.it

Prof. Nicola Marchetti - Unife
E. nicola.marchetti@unipr.it